UCSC_2bit基因组格式ToFASTA格式_little^raccoon-CSDN博客

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twoBitToFa – Convert all or part of .2bit file to fasta format. Usage: twoBitToFa input.2bit output.fa. Options:-seq=name Restrict this to just one sequence. -start=X Start at given position in sequence (zero-based). -end=X End at given position in sequence (non-inclusive). -seqList=file File containing list of the desired sequence names in the format seqSpec[:start-end], e.g. chr1 or chr1:0 conda install linux-64 v377; osx-64 v377; To install this package with conda run one of the following: conda install -c bioconda ucsc-twobittofa conda install -c bioconda/label/cf201901 ucsc-twobittofa I am trying to convert "hg19.2bit" to "hg19.fa" by the "twoBitToFa". I downloaded both files. I have "ubuntu" linux software. I used the following command line to convert the "2bit" to "fa" format as : "twoBitToFa hg19.2bit hg19.fa" but it says "twoBitToFa" is not recognized as a command. what sould I do to use "twoBitToFa" on linux. sincerely, mehmet.--Mehmet Ilyas COSACAK Undergraduate twoBitToFa在UCSC下载小鼠的mm10版本基因组数据时没有找到.fa文件,发现了一个mm10.2bit文件,估计是把基因组序列存成了二进制文件,翻看文件说明:mm10.2bit - contains the complete mouse/mm10 genome sequence in the 2bit file format. Repeats from RepeatMasker a... the software dependencies will be automatically deployed into an isolated environment before execution.

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